Language and Intelligence Laboratory Moffitt Cancer Center

Research

Highlighted

Open collaborative writing with Manubot
Daniel S. Himmelstein, Vincent Rubinetti, David R. Slochower, Dongbo Hu, Venkat S. Malladi, Casey S. Greene, Anthony Gitter
PLOS Computational Biology   ·   24 Jun 2019   ·   doi:10.1371/journal.pcbi.1007128

All

2023

Hetnet connectivity search provides rapid insights into how two biomedical entities are related
Daniel S. Himmelstein, Michael Zietz, Vincent Rubinetti, Kyle Kloster, Benjamin J. Heil, ..., David N. Nicholson, Yun Hao, Blair D. Sullivan, Michael W. Nagle, Casey S. Greene
Cold Spring Harbor Laboratory   ·   07 Jan 2023   ·   doi:10.1101/2023.01.05.522941

2022

PHILM2Web: A high-throughput database of macromolecular host–pathogen interactions on the Web
Tuan-Dung Le, Phuong D Nguyen, Dmitry Korkin, Thanh Thieu
Database   ·   01 Jan 2022   ·   doi:10.1093/database/baac042

2020

Compressing gene expression data using multiple latent space dimensionalities learns complementary biological representations
Gregory P. Way, Michael Zietz, Vincent Rubinetti, Daniel S. Himmelstein, Casey S. Greene
Genome Biology   ·   11 May 2020   ·   doi:10.1186/s13059-020-02021-3

2019

Open collaborative writing with Manubot
Daniel S. Himmelstein, Vincent Rubinetti, David R. Slochower, Dongbo Hu, Venkat S. Malladi, Casey S. Greene, Anthony Gitter
PLOS Computational Biology   ·   24 Jun 2019   ·   doi:10.1371/journal.pcbi.1007128
Sequential compression of gene expression across dimensionalities and methods reveals no single best method or dimensionality
Gregory P. Way, Michael Zietz, Vincent Rubinetti, Daniel S. Himmelstein, Casey S. Greene
Cold Spring Harbor Laboratory   ·   11 Mar 2019   ·   doi:10.1101/573782